Joel Dudley’s Pixel Puddle

I love that this video ties together an Object Relational Mapper (ORM), Rake, and the BioRuby framework. It really gives a good idea of how these components can be tied together for Ruby+Bioinformatics newbies.

I recently gave a talk at the Biomedical Informatics department at Stanford on Tips and Tricks for Bioinformatics Software Engineering. It’s sort of just a brain dump on various aspects of Bioinformatics software engineering covering a broad range of topics.